The Evolutionary History and Phylogeny of Mycobacteria

Canonical fact versus hypothesis testing to decipher transmission of non-tuberculous and tuberculous mycobacteria: a comparative review

Early host immune determinants of protection and disease progression in tuberculosis

Progress and challenges in tuberculosis vaccine development

Rethinking NTM management: new drugs, new approaches, new hope

Neglected mycobacterial diseases - Continuing challenges for a hopeful future

Leprosy: back to the future

From Abyss to Mycobacterial Drug Discovery

Subclonal mmpR5 SNPs Co-occurring with Frameshifts Reveal Hidden Diversity of Bedaquiline Resistance Mechanisms

Molecular Epidemiology of Tuberculosis in Ukraine: A Nationwide Whole-Genome Sequencing Study (2020–2023)

CRISPR and phage footprints reveal an aquatic ancestry for the tuberculosis pathogen

Interred mechanisms of resistance and host immune evasion revealed through network-connectivity analysis of M. tuberculosis complex graph pangenome

Genome-wide association analysis of Mycobacterium tuberculosis lineage 2 reveals key factors for its enhanced epidemic success

Standardised protocol for the detection and quantification of nontuberculous mycobacteria in tap water and its application in investigating the source of clinical infections

Indoor water systems as reservoirs for clinically relevant non-tuberculous mycobacteria in Germany

TB through a One Health lens: Challenges in a rural South African setting

Nontuberculous Mycobacteria in Denmark: Seven Decades of Clinical Occurrence

Mycobacterium tuberculosis trehalose synthesis pathways as key determinant of tuberculosis disease progression

Region-Specific Spatial Transcriptomics Reveal Distinct Immunological Functions in Human Tuberculosis Granulomas

Reprogramming of human macrophages in response to Mycobacterium tuberculosis complex (MTBC) infection

Autologous host-pathogen pairing enhances early immune responses and bacterial control in tuberculosis ex vivo granuloma model

Use of large-scale clinical samples to progressively create a reference catalogue of mycobacterial species.

SIILTIBCY: A New Era in TB Diagnosis

Genotypic drug susceptibility testing for new tuberculosis treatment regimens: The challenge of comprehensive and reliable WHO catalogue-based sequencing data interpretation

Complete genomes reveal unprecedented genomic diversity of Mycobacterium tuberculosis complex from global to within-host variation

When Non-Pathogens Kill: Mycolicibacterium manresensis as a Model for Cryptic Virulence in Mycobacteria

Investigating the virulence of Mycobacterium abscessus using the Drosophila melanogaster infection model

Evaluation of immune responses elicited by respiratory mucosal vaccination strategies against TB in a goat model

Utility of targeted Nanopore sequencing for the detection of drug-resistant tuberculosis in Kyrgyzstan

Immunopeptidomics for vaccines against tuberculosis

Determining the genetic drivers of pathogenicity in the genus Mycobacterium

Single-cell RNA sequencing shows that circulating monocytes enriched in IFN signaling are associated with nontuberculous mycobacteria pulmonary disease in cystic fibrosis 

International Consensus Framework for Managing Treatment Failure in Nontuberculous Mycobacterial Pulmonary Disease

Fidaxomicin, a potential new drug for combinatorial therapies against Mycobacterium abscessus.

Evaluation of NTM-Profiler for identification and drug resistance prediction in nontuberculous mycobacteria from whole genome sequencing data

Modeling a genetic condition that protects against tuberculosis

Preclinical murine models for studying lung infection and antimicrobial treatments of Nontuberculous mycobacteria

Validating a SNP calling pipeline for Mycobacterium leprae

The diagnostic potential of Mycobacterium ulcerans Mycolactone and the surface protein MUL_3720

Natural drivers and Human-Induced Pressures shaping the distribution of Mycobacterium ulcerans and Buruli Ulcer

Solving the transmission enigma of Buruli ulcer (Mycobacterium ulcerans infection)

Implementing large-scale genomics and genomic subtractive strategies to expand the target space in Mycobacterium tuberculosis: a strategy for improving target-based drug discovery

Exploring in silico drug repurposing to develop new therapeutic alternatives for tuberculosis

DprE1 inhibitors and bedaquiline combination for TB treatment: in-vitro and in-silico analyses

Improved models for drug development against non-tuberculous mycobacteria

Modeling co-Infection of Mycobacterium abscessus and Pseudomonas aeruginosa in lab and animal models

Microbiota modulation of mycobacteria-based immunotherapy in the orthotopic murine model of bladder cancer

Increased sensitivity for Mycobacterium tuberculosis detection with the updated FluoroType MTBDR v2

Diagnostic accuracy and operational assessment of microscopy and molecular tests for pulmonary tuberculosis in Panama

Role of the inhA_S94A Mutation on drug resistance and the spread of an Isoniazid-Resistant Tuberculosis strain

Diagnostic capacity and Biosafety practices for Tuberculosis: Assessment of the Portuguese National Laboratory Network

Speeding up drug susceptibility testing in Mycobacterium tuberculosis using RNA biomarkers

Evaluating the performance of broth microdilution for the detection of rifampicin-resistant tuberculosis caused by borderline rpoB mutants

Treatment of a dog with active tuberculosis (Poland)

Tuberculosis in alpacas in Poland in 2018-2019

Culture-Free Targeted Whole Genome Enrichment of Mycobacterium tuberculosis and Next-Generation Sequencing Enables Rapid Surveillance of Drug Resistance and Genomic Tracking.

Detection of first-line and second-line Drug-Resistance mediating mutations in Mycobacterium tuberculosis with FluoroLyse and GenoXtract fleXT extracted DNA from sputum Using Next-Generation Sequencing 

Impact of 'borderline' rpoB mutations on the MICs of Mycobacterium tuberculosis against new and repurposed anti-tuberculosis drugs

Overcoming barriers for non-tuberculous Mycobacteria identification: application of a culture-independent targeted sequencing approach

Mycobacterium avium bacteriemia: direct identification and genotypic susceptibility characterization from positive blood culture bottles

Isolation of Mycobacterium nebraskense in four oncolocic patients

Widespread preexisting resistance to new and repurposed anti-tuberculosis drugs through loss-of-function

Culture-free sequencing of M. tuberculosis: evaluating targeted and whole-genome approaches for genotyping and drug-resistance detection

Big MAC: whole-genome sequencing uncovers novel members of the Mycobacterium avium complex unidentified at the species level by line-probe assays

Piloting Precision: Implementation of targeted next generation sequencing for antibiotic resistance testing into the diagnostic algorithm of Tuberculosis in Kyrgyzstan

Acceptance of tongue swabs for tuberculosis screening among healthcare workers in Italy: a qualitative study

Genetic characterisation of Mycobacterium bovis strains isolated from cattle in Northern Africa

Rapidly and reproducibly building a catalogue of resistance-associated variants using 53,700 M. tuberculosis samples with genomes and DST data.

Growth phase-specific DNA methylation bias in Mycobacterium tuberculosis clinical isolates

Lung ultrasound for the detection of pulmonary tuberculosis using expert- and AI-guided interpretation: a prospective cohort study

Subpopulations in clinical samples of M. tuberculosis can give rise to rifampicin resistance and shed light on how resistance was acquired

Emergence and reversion of rifampicin resistance during discontinuous treatment of tuberculosis in an HIV patient

Use of large-scale clinical samples to progressively create a reference catalogue of mycobacterial species.

Acceptability of tongue swabs for tuberculosis screening in migrant settings: A qualitative study with healthcare workers in Lombardy, Italy

Rapid drug resistance prediction in positive Mycobacterium tuberculosis clinical samples using an extensive targeted next-generation sequencing panel

Evaluation of new microdilution Plates (FRATMYC1 and FRATMYC2) for drug susceptibility testing to old and new antibiotics against slow growing non-tuberculous mycobacteria

Evaluation of an Oxford Nanopore sequencing workflow for mycobacteria from primary MGIT culture

Comparison of Illumina and Oxford Nanopore Technology sequencing of Mycobacterium tuberculosis

Stool based diagnostics for TB: who stands the benefit and how far are countries with the implementation.

A rapid DNA extraction method from clinical culture isolates for mycobacteria identification using INNO-LiPA mycobacteria v2.

Exploring patterns of serum CRP level reduction in response to treatment initiation in Latvian patients with pulmonary tuberculosis: the impact of Mycobacterium tuberculosis genotype

Vitamin D receptor BsmI haplotype BB confers lower 25(OH)D levels during tuberculosis: A cross-sectional study

Chitosan-particle-based cystatin F RNA silencing as a therapeutic strategy to improve the control of intracellular Mycobacterium tuberculosis

Redefining the role of the Signalling by Nuclear Receptors Pathway in Tuberculosis

Dueling forces: how glucocorticoids both help and hurt in tuberculosis.

Optimization of 3D culture conditions with five diferent tumor cell lines to monitor mycobacterial antitumor activity

Exploring the role of Mincle in macrophage-mediated antitumoral responses

In vitro modelling of the tuberculosis granuloma for antimicrobial and host-directed drug screening

Phagocytosis of Mycobacterium fortuitum by caprine alveolar macrophages is associated with iNOS and proinflammatory marker expression

Mycobacteria extracellular vesicles as alternative immunotherapy for Bladder cancer

Pattern of genotypic mutations and level of MIC for results evaluation of drug susceptibility testing of M. tuberculosis

A next-generation LLM-interrogable mycobacterial knowledge base

Comparative analysis of nanopore and illumina sequencing for molecular epidemiology of M. tuberculosis

Improving the Reproducibility of RNA Sequencing Methodologies in Mycobacterium tuberculosis: A Pilot Study on Isoniazid Treatment

Transcriptional plasticity of bedaquiline-resistant Mycobacterium tuberculosis under drug pressure

GOMA:  an open-source bioinformatics pipeline for genomic characterization of Mycobacterium tuberculosis complex in low resource settings

Whole-genome sequencing for drug resistance detection and genotyping of clinical Mycobacterium tuberculosis isolates in two-year period

Insights into Drug Resistance in Mycobacterium avium Pulmonary Disease: A Retrospective Cohort Study

Benchmarking algorithms for species-level profiling of mycobacteria in shotgun metagenomic samples, and application to the distribution of known mycobacteria in soils

Global Genomic Landscape of Mycobacterium avium: Diversity, Transmission Dynamics, and Drug Resistance Mechanisms

In-depth analysis of predominant Mycobacterium tuberculosis L2.2.M3 strain from Panama, using TB-Annotator

When Bugs Spill Secrets: Leveraging Bacterial Genomes and Machine Learning to Identify Drivers of Recent Tuberculosis Transmission in Accra, Ghana

Comparison of DNA-extraction for Illumina and Oxford Nanopore Sequencing in Mycobacterial Isolates

The function and transcriptional regulation of M. tuberculosis efflux pumps

RAVEN and iMAGE: An integrated approach to analyse and visualise whole genome data for Mycobacterium bovis genomic surveillance and epidemiology

Comparing passed slave migration history to Mycobacterium tuberculosis  genomic population structure to reconstruct the origins of L1 tuberculosis infections in Brazil

Secondary antibiotic resistance in rifampicin-resistant tuberculosis in a high-burden setting

Understanding tuberculosis transmission in Latvia: insights from molecular epidemiology

Unexpected diversity in long-term infections by non-tuberculous mycobacteria revealed by longitudinal genomic analysis

Using the mutant selection window and mathematical modelling to predict resistance selection over long-term Mycobacterium tuberculosis treatment in vitro

Investigating antibiotic-induced persistence in Mycobacterium abscessus

An alternative for high-throughput Illumina-based sequencing: Individualized nanopore analysis of new incident cases coupled to targeted sequencing

An extended genomic analysis reveals unexpected transmissions involving the pediatric population in Madrid with tuberculosis

Lineage-dependent rifampicin tolerance in Mycobacterium tuberculosis complex strains

Genomic diversity of Mycobacterium abscessus isolates in Portugal

Genomic insights into Mycobacterium avium complex isolates from Portugal reveal extensive genetic diversity

Population structure of Mycobacterium tuberculosis Lineage 2 in Kazakhstan based on whole-genome sequencing

Do we use the right breakpoints for delamanid susceptibility testing ?

Emergence of bedaquiline resistance in samples rifampicin resistant Tuberculosis in Mozambique

Relaunching crypticproject.org: making the MTBC genetic and pDST datasets collated by the CRyPTIC project more available to the wider community

Uncovering hidden complexity in TB infections: A novel WGS-based method for detecting mixed MTBC infections

Transcriptomic insight into metabolic adaptations and efflux-based mechanisms underlying bedaquiline resistance

Different paths to progress towards a faster and more precise genomic epidemiology in tuberculosis

Characterization of the putative cobalt ECF importer CbiMNQO and its cobalt/nickel dependent regulation by the ArsR/SmtB-like regulator CbiR in Mycobacterium smegmatis

Improving the benchmark of variant calling of M. tuberculosis using more complex in silico genomes

The nature and consequence of epistasis between drug resistance mutations in Mycobacterium tuberculosis

Genomic description of routinely laboratory-diagnosed XDR-TB strains from 2010 to 2019 in the Western Cape Province, South Africa

Deciphering NucS interactions to explore anti-evolution strategies against Mycobacterium tuberculosis

Strategies to detect emerging SNPs in clustered Mycobacterium tuberculosis isolates for precision epidemiology.

Evolutionary dynamics of MDR-TB and the escalation of drug resistance and clinical impact: a case study from Portugal

Whole-genome sequencing-based surveillance system for Mycobacterium tuberculosis in Portugal

Endemic transmission of a Mycobacterium tuberculosis L2.2.M3 sublineage of the L2 lineage within Colon, Panama: a prospective study

Genomic analysis of a novel nontuberculous mycobacterial isolate causing persistent, disseminated infection after cardiac transplantation

Phylogenetics and ESX-1 characterisation of a new human pathotype in the Mycobacterium conceptionense / Mycobacterium senegalense clade

Twenty-three years surveillance of antimicrobial resistance in leprosy

The drinking water-gut microbiome axis in NTM disease

Mycobacterium appelbergii sp. nov., a novel species isolated from a drinking water fountain in a rural community

Analyzing the mycolic acids (MAs)  and lipids from the cell wall of Mycobacterium bovis strains isolated from Zacatecas and nearby regions.

Computational identification of broadly protective Mycobacterium tuberculosis vaccine candidate

Identification of Mycobacterium avium Peptides Presented by Major Histocompatibility Complex Through Immunopeptidomics

Detected cases of Mycobacterium tuberculosis infection in domestic and companion animals – indicators of epidemiological trends and health risks

GenEpi-BioTrain: Interdisciplinary training in genomic epidemiology and public health bioinformatics: 5th edition (tuberculosis focus)

The impact of environmental factors on tuberculosis in Albania, 2023–2024

Linking long-term and short-term Mycobacterium tuberculosis transmission dynamics inferred form 15 years study in Orizaba, Mexico

Tuberculosis Alert: a board game designed to promote tuberculosis awareness and fight stigma

Genomic Analysis of Mycobacterium chelonae isolates associated with heater-cooler units: a potential risk of infection during cardiac surgery

Applications and challenges of prospective whole genome sequencing for tuberculosis public health investigations: a systematic review.

Recent updates to the SITVIT databases: ongoing development of the SITVITEXTEND and SITVITGeno projects

The impact, implementation, and ethics of whole genome sequencing for tuberculosis public health: staff perspectives from an outbreak in Victoria, Australia

‘I was in a place where I was going to be healed. Let others think what they want’: A qualitative study on the experience of having tuberculosis in a sample of the Portuguese population

A multinational Delphi consensus on TB screening of migrants in Europe

Determining Epidemiological Cut-Off Values for BTZ-043 and Ganfeborole Using the EUCAST Reference Method

Genomic Surveillance Uncovers Ongoing Tuberculosis Transmission in Catalonia (2022–2024).

Exploring LL-37-Based Synthetic Peptides to combat Multidrug-Resistant Tuberculosis: A step toward innovative therapies.

Validation of a cost-effective Drosophila melanogaster platform to identify novel treatments against tuberculosis

Building a Large Dataset of Genome Mutations Associated with Antibiotic Resistance in Mycobacterium tuberculosis.

In vitro activity of MRX-6038, a novel Leucyl-tRNA Synthetase inhibitor, against Mycobacterium abscessus

Microbial Antagonism Against Nontuberculous Mycobacteria